The intensity of the spark will be the same, regardless of whether the coil is connected positive or negative ground. As far as the distributor breaker points and condenser being proper, you'll get a good hot spark. No question there.
HOWEVER, the comprssed charge in the cylinder does care what the polarity of the spark at the plug center terminal is. You have to have that polarity NEGATIVE, in order for the cylinder to fire properly, and efficiently. This is something that was established many years before any of us got our first pat on the butt, and it hasn't changed yet, and never will.
I'm sure that the reason for this phenomenon is known, but I've never seen it (nor have ever tried to find out). I have tried a coil of wrong polarity on a couple cars, and they run poorly with that hookup.
If there is still doubt about this, I suggest running a combustion efficiency test on the car, analyzing the exhaust gases. I'd expect a very different result from one coil polarity to the other.